Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gm27023-201ENSMUST00000182372 285 ntBASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gm7118-201ENSMUST00000200167 1003 ntBASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 AC116503.1-201ENSMUST00000215445 2192 ntBASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
Cpsf3Q9QXK7 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Gm14999-201ENSMUST00000121039 624 ntBASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 AC154171.1-201ENSMUST00000224610 643 ntBASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Gm10076-201ENSMUST00000073238 384 ntBASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Cpsf3Q9QXK7 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gm13570-201ENSMUST00000140763 309 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gm9022-201ENSMUST00000182482 992 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 AC113031.8-201ENSMUST00000227856 631 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Cpsf3Q9QXK7 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 70.3 ms