Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Rnf17-202ENSMUST00000223627 2077 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm8038-201ENSMUST00000164674 2044 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm38385-201ENSMUST00000194454 2351 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Cad-206ENSMUST00000201838 3153 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm12165-201ENSMUST00000117047 342 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 AC159205.5-202ENSMUST00000224849 386 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Ccdc88aQ5SNZ0 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Tepsin-201ENSMUST00000026442 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm5525-201ENSMUST00000190438 1312 ntBASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm12795-201ENSMUST00000117594 539 ntBASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Mup-ps26-201ENSMUST00000121751 202 ntBASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Ccdc88aQ5SNZ0 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm12029-201ENSMUST00000120073 832 ntBASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm18893-201ENSMUST00000198416 943 ntBASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Ccdc88aQ5SNZ0 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm14150-201ENSMUST00000122404 1354 ntBASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Ccdc88aQ5SNZ0 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms