Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC14.95□□□□□ -0.02
Ercc3P49135 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC14.95□□□□□ -0.02
Ercc3P49135 Gm13786-201ENSMUST00000122371 333 ntBASIC14.95□□□□□ -0.02
Ercc3P49135 Gm24548-201ENSMUST00000158650 108 ntBASIC14.95□□□□□ -0.02
Ercc3P49135 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC14.95□□□□□ -0.02
Ercc3P49135 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC14.95□□□□□ -0.02
Ercc3P49135 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
Ercc3P49135 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC14.95□□□□□ -0.02
Ercc3P49135 AC108416.1-202ENSMUST00000228927 1201 ntBASIC14.95□□□□□ -0.02
Ercc3P49135 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC14.95□□□□□ -0.02
Ercc3P49135 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Ercc3P49135 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.95□□□□□ -0.02
Ercc3P49135 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ercc3P49135 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Zfhx2os-202ENSMUST00000183750 4375 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC14.94□□□□□ -0.02
Ercc3P49135 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Gm13394-201ENSMUST00000121658 1000 ntBASIC14.94□□□□□ -0.02
Ercc3P49135 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC14.94□□□□□ -0.02
Ercc3P49135 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC14.94□□□□□ -0.02
Ercc3P49135 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC14.94□□□□□ -0.02
Ercc3P49135 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Ercc3P49135 Gm5904-201ENSMUST00000210286 865 ntBASIC14.94□□□□□ -0.02
Ercc3P49135 Cts7-204ENSMUST00000225321 1257 ntBASIC14.94□□□□□ -0.02
Ercc3P49135 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.94□□□□□ -0.02
Ercc3P49135 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ercc3P49135 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Ercc3P49135 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ercc3P49135 Gm7114-201ENSMUST00000190159 1789 ntBASIC14.93□□□□□ -0.02
Ercc3P49135 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC14.93□□□□□ -0.02
Ercc3P49135 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.93□□□□□ -0.02
Ercc3P49135 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC14.93□□□□□ -0.02
Ercc3P49135 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.93□□□□□ -0.02
Ercc3P49135 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC14.93□□□□□ -0.02
Ercc3P49135 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
Ercc3P49135 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ercc3P49135 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC14.93□□□□□ -0.02
Ercc3P49135 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC14.93□□□□□ -0.02
Ercc3P49135 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Ercc3P49135 Gm24526-201ENSMUST00000082921 158 ntBASIC14.93□□□□□ -0.02
Ercc3P49135 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ercc3P49135 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.93□□□□□ -0.02
Ercc3P49135 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Ercc3P49135 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ercc3P49135 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms