Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm21811-201ENSMUST00000096485 930 ntBASIC14.86□□□□□ -0.03
Col3a1P08121 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Col3a1P08121 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Col3a1P08121 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col3a1P08121 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Col3a1P08121 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm14058-201ENSMUST00000116082 735 ntBASIC14.85□□□□□ -0.03
Col3a1P08121 Cd63-ps-202ENSMUST00000154992 717 ntBASIC14.85□□□□□ -0.03
Col3a1P08121 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm9630-201ENSMUST00000178304 885 ntBASIC14.85□□□□□ -0.03
Col3a1P08121 Gm3508-201ENSMUST00000186012 792 ntBASIC14.85□□□□□ -0.03
Col3a1P08121 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm4607-201ENSMUST00000206649 577 ntBASIC14.85□□□□□ -0.03
Col3a1P08121 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
Col3a1P08121 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.85□□□□□ -0.03
Col3a1P08121 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.85□□□□□ -0.03
Col3a1P08121 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
Col3a1P08121 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col3a1P08121 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col3a1P08121 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Col3a1P08121 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm6580-201ENSMUST00000117504 1357 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Mir680-2-201ENSMUST00000102163 110 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm23251-201ENSMUST00000103773 110 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm14291-201ENSMUST00000143645 804 ntTSL 2 BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC14.84□□□□□ -0.03
Col3a1P08121 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 CT009713.8-201ENSMUST00000225448 560 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 AC133602.1-201ENSMUST00000227510 509 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC14.84□□□□□ -0.03
Col3a1P08121 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Gm26616-202ENSMUST00000195676 3107 ntBASIC14.84□□□□□ -0.03
Col3a1P08121 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Col3a1P08121 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col3a1P08121 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col3a1P08121 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col3a1P08121 Gm11628-201ENSMUST00000117568 171 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Gm11511-201ENSMUST00000118146 540 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC14.83□□□□□ -0.03
Col3a1P08121 Mir7677-201ENSMUST00000184226 67 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col3a1P08121 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Gm43184-201ENSMUST00000197247 542 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Gm43830-201ENSMUST00000198760 1067 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Gm5051-201ENSMUST00000204085 485 ntBASIC14.83□□□□□ -0.03
Col3a1P08121 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col3a1P08121 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col3a1P08121 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col3a1P08121 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Col3a1P08121 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms