Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Intu-202ENSMUST00000091186 6387 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Cpsf3Q9QXK7 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm24231-201ENSMUST00000104315 133 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm12314-201ENSMUST00000118104 538 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm13350-201ENSMUST00000120519 479 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm14760-201ENSMUST00000121831 999 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm37259-201ENSMUST00000193903 849 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm39404-201ENSMUST00000216350 313 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm26035-201ENSMUST00000083065 308 ntBASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Cpsf3Q9QXK7 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm14726-201ENSMUST00000120623 896 ntBASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm26956-201ENSMUST00000182176 986 ntBASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 AC122371.3-201ENSMUST00000223402 1061 ntBASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Washc5-201ENSMUST00000022976 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
Cpsf3Q9QXK7 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
Cpsf3Q9QXK7 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 52.7 ms