Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Gm11543-201ENSMUST00000120758 370 ntBASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 AA619741-201ENSMUST00000195095 646 ntBASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Gm43073-201ENSMUST00000198200 1189 ntBASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Arhgap33-206ENSMUST00000208522 781 ntTSL 3 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Gm6376-201ENSMUST00000209407 580 ntBASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 AV026068-213ENSMUST00000223675 1171 ntBASIC10.05□□□□□ -0.8
Smco4Q9JIS3 CT010486.3-201ENSMUST00000224555 811 ntBASIC10.05□□□□□ -0.8
Smco4Q9JIS3 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Sp140-201ENSMUST00000080204 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Dll4-201ENSMUST00000102517 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Rnf41-201ENSMUST00000096386 3144 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Smco4Q9JIS3 Xirp1-201ENSMUST00000111635 5839 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Scn8a-203ENSMUST00000108908 7030 ntAPPRIS ALT1 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Psd4-201ENSMUST00000056641 4748 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Timeless-201ENSMUST00000055539 4457 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Abhd18-203ENSMUST00000159774 4455 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Gm27300-201ENSMUST00000184085 97 ntBASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Gm27335-201ENSMUST00000184758 97 ntBASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Ccdc97-201ENSMUST00000002683 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Rims1-203ENSMUST00000097809 6179 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Gm43937-201ENSMUST00000204640 3122 ntBASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Rsph10b-203ENSMUST00000166847 2878 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Col11a1-201ENSMUST00000092155 7667 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Smco4Q9JIS3 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Tti2-204ENSMUST00000210129 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Ccdc63-201ENSMUST00000058960 2299 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Tcp11l1-202ENSMUST00000111118 5474 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Smco4Q9JIS3 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC10.03□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms