Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm37827-201ENSMUST00000194486 1542 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm14723-201ENSMUST00000118686 215 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm5637-201ENSMUST00000153890 1119 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm43822-201ENSMUST00000200285 476 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm3961-201ENSMUST00000204425 994 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm6334-201ENSMUST00000207083 228 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 AC167013.1-201ENSMUST00000228592 202 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm22058-201ENSMUST00000083393 310 ntBASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC12.94□□□□□ -0.34
Vps28Q9D1C8 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm13297-201ENSMUST00000120205 934 ntBASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm13342-201ENSMUST00000121055 207 ntBASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm13316-201ENSMUST00000140537 691 ntBASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm8227-201ENSMUST00000223306 571 ntBASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Vps28Q9D1C8 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Uggt2-212ENSMUST00000156203 6456 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Daam2-202ENSMUST00000224595 1926 ntBASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.92□□□□□ -0.34
Vps28Q9D1C8 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 86.1 ms