Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Gm12266-201ENSMUST00000120311 962 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 Gm12566-201ENSMUST00000121479 359 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 Gm12164-201ENSMUST00000121695 551 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
Trim28Q62318 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Gm27627-201ENSMUST00000183644 150 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 Gm18711-201ENSMUST00000199341 750 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 Gm44882-201ENSMUST00000205702 802 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 Abhd11os-203ENSMUST00000222613 363 ntBASIC16.25■□□□□ 0.19
Trim28Q62318 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim28Q62318 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Trim28Q62318 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trim28Q62318 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Gm14247-201ENSMUST00000120950 237 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 Gm6039-201ENSMUST00000121667 1250 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC16.24■□□□□ 0.19
Trim28Q62318 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
Trim28Q62318 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Mir6979-201ENSMUST00000183927 56 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Gm38385-201ENSMUST00000194454 2351 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 AC171277.1-201ENSMUST00000216902 1441 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 Usp53-201ENSMUST00000090379 6185 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Gm2420-201ENSMUST00000119864 2149 ntBASIC16.24■□□□□ 0.19
Trim28Q62318 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Trim28Q62318 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Trim28Q62318 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim28Q62318 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Gm8038-201ENSMUST00000164674 2044 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Trim28Q62318 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim28Q62318 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Gm22133-201ENSMUST00000102082 109 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 Gm7722-201ENSMUST00000120646 741 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC16.23■□□□□ 0.19
Trim28Q62318 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Gm7848-201ENSMUST00000210739 718 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 AC098716.1-201ENSMUST00000213527 703 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 AC153954.1-201ENSMUST00000216959 255 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 Gm18730-201ENSMUST00000218038 343 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Gm18782-201ENSMUST00000209023 1399 ntBASIC16.23■□□□□ 0.19
Trim28Q62318 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC16.23■□□□□ 0.19
Trim28Q62318 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trim28Q62318 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC16.22■□□□□ 0.19
Trim28Q62318 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC16.22■□□□□ 0.19
Trim28Q62318 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Trim28Q62318 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
Trim28Q62318 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 AC154671.1-201ENSMUST00000228617 1578 ntBASIC16.22■□□□□ 0.19
Trim28Q62318 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC16.22■□□□□ 0.19
Trim28Q62318 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trim28Q62318 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms