Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm43858-201ENSMUST00000199418 1778 ntBASIC14.85□□□□□ -0.03
Limch1Q3UH68 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.85□□□□□ -0.03
Limch1Q3UH68 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm13786-201ENSMUST00000122371 333 ntBASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm8099-201ENSMUST00000200510 742 ntBASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm6334-201ENSMUST00000207083 228 ntBASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
Limch1Q3UH68 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm38157-201ENSMUST00000194178 1698 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Snord83b-201ENSMUST00000104546 94 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm23363-201ENSMUST00000175024 79 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm6222-202ENSMUST00000182143 629 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm18827-201ENSMUST00000188341 790 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Limch1Q3UH68 n-R5s77-201ENSMUST00000083757 119 ntBASIC14.84□□□□□ -0.03
Limch1Q3UH68 Tgm6-201ENSMUST00000028888 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Slco4a1-202ENSMUST00000038259 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Limch1Q3UH68 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.03
Limch1Q3UH68 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC14.83□□□□□ -0.04
Limch1Q3UH68 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Gm26083-201ENSMUST00000157904 193 ntBASIC14.83□□□□□ -0.04
Limch1Q3UH68 Mir3102-201ENSMUST00000175555 104 ntBASIC14.83□□□□□ -0.04
Limch1Q3UH68 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.83□□□□□ -0.04
Limch1Q3UH68 AC169036.1-201ENSMUST00000227994 296 ntBASIC14.83□□□□□ -0.04
Limch1Q3UH68 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Limch1Q3UH68 n-R5s195-201ENSMUST00000082891 119 ntBASIC14.83□□□□□ -0.04
Limch1Q3UH68 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 72.3 ms