Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.12□□□□□ -0.15
Col2a1P28481 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC14.12□□□□□ -0.15
Col2a1P28481 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC14.12□□□□□ -0.15
Col2a1P28481 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC14.12□□□□□ -0.15
Col2a1P28481 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Col2a1P28481 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Col2a1P28481 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC14.12□□□□□ -0.15
Col2a1P28481 Gm9211-201ENSMUST00000182882 975 ntBASIC14.12□□□□□ -0.15
Col2a1P28481 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Gm44124-201ENSMUST00000204159 472 ntBASIC14.12□□□□□ -0.15
Col2a1P28481 AC151275.1-201ENSMUST00000224870 585 ntBASIC14.12□□□□□ -0.15
Col2a1P28481 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Ntng1-201ENSMUST00000051253 327 ntBASIC14.12□□□□□ -0.15
Col2a1P28481 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.12□□□□□ -0.15
Col2a1P28481 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col2a1P28481 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
Col2a1P28481 Gm5780-201ENSMUST00000217774 1834 ntBASIC14.11□□□□□ -0.15
Col2a1P28481 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Gm2420-201ENSMUST00000119864 2149 ntBASIC14.11□□□□□ -0.15
Col2a1P28481 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Gm22334-201ENSMUST00000158070 133 ntBASIC14.11□□□□□ -0.15
Col2a1P28481 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Gm42997-202ENSMUST00000200321 985 ntBASIC14.11□□□□□ -0.15
Col2a1P28481 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.11□□□□□ -0.15
Col2a1P28481 AC126257.1-201ENSMUST00000213195 1536 ntBASIC14.11□□□□□ -0.15
Col2a1P28481 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Col2a1P28481 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.11□□□□□ -0.15
Col2a1P28481 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.1□□□□□ -0.15
Col2a1P28481 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
Col2a1P28481 Gm10152-201ENSMUST00000193475 1344 ntBASIC14.1□□□□□ -0.15
Col2a1P28481 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
Col2a1P28481 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Gm12857-201ENSMUST00000117678 592 ntBASIC14.1□□□□□ -0.15
Col2a1P28481 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Col2a1P28481 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.1□□□□□ -0.15
Col2a1P28481 Gm5523-201ENSMUST00000180415 997 ntBASIC14.1□□□□□ -0.15
Col2a1P28481 Gm5706-201ENSMUST00000181525 993 ntBASIC14.1□□□□□ -0.15
Col2a1P28481 Gm8100-201ENSMUST00000182906 988 ntBASIC14.1□□□□□ -0.15
Col2a1P28481 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC14.1□□□□□ -0.15
Col2a1P28481 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Col2a1P28481 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col2a1P28481 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col2a1P28481 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Col2a1P28481 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
Col2a1P28481 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col2a1P28481 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col2a1P28481 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Col2a1P28481 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC14.09□□□□□ -0.15
Col2a1P28481 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
Col2a1P28481 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
Col2a1P28481 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms