Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm32828-202ENSMUST00000219198 2111 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
Cdx1P18111 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Gm6211-201ENSMUST00000147973 4275 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Btrc-209ENSMUST00000224478 2194 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC10.23□□□□□ -0.77
Cdx1P18111 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
Cdx1P18111 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Wdyhv1-201ENSMUST00000067563 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Cdx1P18111 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Mindy1-202ENSMUST00000107187 2827 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 BC043934-202ENSMUST00000185694 2356 ntBASIC10.23□□□□□ -0.77
Cdx1P18111 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Cdx1P18111 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Cdx1P18111 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Cdx1P18111 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Cpa5-201ENSMUST00000062758 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Fhl1-204ENSMUST00000114772 2283 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Fut2-201ENSMUST00000069800 2955 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Mir874-201ENSMUST00000104769 76 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
Cdx1P18111 Ldha-ps-201ENSMUST00000119390 995 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC10.22□□□□□ -0.77
Cdx1P18111 Gm9002-201ENSMUST00000178437 499 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Gm5354-201ENSMUST00000182417 973 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Gm44124-201ENSMUST00000204159 472 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC10.22□□□□□ -0.77
Cdx1P18111 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Gm5425-201ENSMUST00000214125 459 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 AC122305.4-201ENSMUST00000216159 1206 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC10.22□□□□□ -0.77
Cdx1P18111 AC154846.1-201ENSMUST00000226278 862 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 AC121598.1-201ENSMUST00000228224 1019 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Cdx1P18111 Gm37057-201ENSMUST00000192624 1916 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Cdx1P18111 C2cd5-213ENSMUST00000204655 3526 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Cdx1P18111 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Gpr139-201ENSMUST00000084650 4843 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Gm14452-201ENSMUST00000118680 1632 ntBASIC10.22□□□□□ -0.77
Cdx1P18111 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Cdx1P18111 Gm17244-201ENSMUST00000192482 3416 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
Cdx1P18111 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC10.21□□□□□ -0.77
Cdx1P18111 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC10.21□□□□□ -0.77
Cdx1P18111 Gm15824-201ENSMUST00000119516 955 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC10.21□□□□□ -0.77
Cdx1P18111 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC10.21□□□□□ -0.77
Cdx1P18111 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Gm8602-201ENSMUST00000184045 607 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 Gm45059-201ENSMUST00000205558 1077 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 Gm18062-201ENSMUST00000208020 547 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 Gm18055-201ENSMUST00000208254 547 ntBASIC10.21□□□□□ -0.77
Cdx1P18111 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC10.21□□□□□ -0.77
Cdx1P18111 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Cdx1P18111 AC158987.1-201ENSMUST00000214586 961 ntTSL 5 BASIC10.21□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 39.5 ms