Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC14.73□□□□□ -0.05
Scn11aQ9R053 Gm9785-201ENSMUST00000062642 1006 ntBASIC14.73□□□□□ -0.05
Scn11aQ9R053 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 AC160405.1-201ENSMUST00000218207 1545 ntBASIC14.72□□□□□ -0.05
Scn11aQ9R053 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Gm14058-201ENSMUST00000116082 735 ntBASIC14.72□□□□□ -0.05
Scn11aQ9R053 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Gm8343-201ENSMUST00000182705 994 ntBASIC14.72□□□□□ -0.05
Scn11aQ9R053 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC14.72□□□□□ -0.05
Scn11aQ9R053 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Scn11aQ9R053 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Ppil6-201ENSMUST00000105507 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Mup-ps26-201ENSMUST00000121751 202 ntBASIC14.71□□□□□ -0.05
Scn11aQ9R053 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Ighv4-2-201ENSMUST00000192975 362 ntBASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm19166-201ENSMUST00000196041 1063 ntBASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm42682-201ENSMUST00000198349 1265 ntBASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm18711-201ENSMUST00000199341 750 ntBASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm3028-201ENSMUST00000213805 1119 ntBASIC14.71□□□□□ -0.05
Scn11aQ9R053 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Scn11aQ9R053 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scn11aQ9R053 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scn11aQ9R053 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scn11aQ9R053 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scn11aQ9R053 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
Scn11aQ9R053 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Scn11aQ9R053 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Ywhaq-ps2-201ENSMUST00000117738 643 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm15595-201ENSMUST00000120840 961 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm5732-201ENSMUST00000182596 1007 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm3332-201ENSMUST00000189337 928 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Ntrk2-209ENSMUST00000225950 2640 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm23596-201ENSMUST00000104304 132 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Gm12165-201ENSMUST00000117047 342 ntBASIC14.7□□□□□ -0.06
Scn11aQ9R053 Adap2os-201ENSMUST00000140556 984 ntTSL 5 BASIC14.7□□□□□ -0.06
Scn11aQ9R053 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms