Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Gm12846-201ENSMUST00000120431 1373 ntBASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Ddx56Q9D0R4 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Msh6-201ENSMUST00000005503 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm13615-201ENSMUST00000120242 1612 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm38273-201ENSMUST00000194987 2382 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm11591-201ENSMUST00000120063 702 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm9630-201ENSMUST00000178304 885 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Snora73a-201ENSMUST00000082453 205 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 n-R5s195-201ENSMUST00000082891 119 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Ddx56Q9D0R4 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Ddx56Q9D0R4 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm12502-201ENSMUST00000120197 444 ntBASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm14760-201ENSMUST00000121831 999 ntBASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm6222-202ENSMUST00000182143 629 ntBASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gm37827-201ENSMUST00000194486 1542 ntBASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Ddx56Q9D0R4 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms