Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm13350-201ENSMUST00000120519 479 ntBASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Gm44364-201ENSMUST00000198368 141 ntBASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Snora73a-201ENSMUST00000082453 205 ntBASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Gm37472-201ENSMUST00000192342 4052 ntBASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Smc1aQ9CU62 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Mir686-201ENSMUST00000102174 109 ntBASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm11618-201ENSMUST00000117946 267 ntBASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm13342-201ENSMUST00000121055 207 ntBASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm7584-201ENSMUST00000175829 940 ntBASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm43133-201ENSMUST00000197472 463 ntBASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Smc1aQ9CU62 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC14.15□□□□□ -0.15
Smc1aQ9CU62 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Smc1aQ9CU62 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Smc1aQ9CU62 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gm7783-201ENSMUST00000204795 781 ntBASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gm42863-201ENSMUST00000197875 2958 ntBASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.14□□□□□ -0.15
Smc1aQ9CU62 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.13□□□□□ -0.15
Smc1aQ9CU62 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Smc1aQ9CU62 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms