Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.09□□□□□ -0.31
Cdk5rap3Q99LM2 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.08□□□□□ -0.31
Cdk5rap3Q99LM2 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
Cdk5rap3Q99LM2 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.08□□□□□ -0.31
Cdk5rap3Q99LM2 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Cdk5rap3Q99LM2 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Cdk5rap3Q99LM2 Cacna1c-201ENSMUST00000075591 7584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 4921507P07Rik-201ENSMUST00000031852 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm11637-201ENSMUST00000120601 592 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm12091-201ENSMUST00000146791 830 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm17208-201ENSMUST00000168388 535 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 2610306M01Rik-201ENSMUST00000185414 1042 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm37042-201ENSMUST00000193816 581 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm10371-202ENSMUST00000228010 1081 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Daam2-202ENSMUST00000224595 1926 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Cdk5rap3Q99LM2 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 66.7 ms