Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.89□□□□□ -0.03
Trim56Q80VI1 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Trim56Q80VI1 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm23270-201ENSMUST00000104055 131 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm11222-201ENSMUST00000119005 738 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm24845-201ENSMUST00000158034 109 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm42937-201ENSMUST00000197360 752 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm44364-201ENSMUST00000198368 141 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Sufu-204ENSMUST00000120778 1850 ntTSL 2 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm45266-201ENSMUST00000210111 2173 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.88□□□□□ -0.03
Trim56Q80VI1 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim56Q80VI1 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Trim56Q80VI1 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Gm18304-201ENSMUST00000189162 546 ntBASIC14.87□□□□□ -0.03
Trim56Q80VI1 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Gm10076-201ENSMUST00000073238 384 ntBASIC14.87□□□□□ -0.03
Trim56Q80VI1 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim56Q80VI1 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm13570-201ENSMUST00000140763 309 ntBASIC14.86□□□□□ -0.03
Trim56Q80VI1 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm8494-201ENSMUST00000178171 1233 ntBASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm26956-201ENSMUST00000182176 986 ntBASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Trim56Q80VI1 Gm4864-201ENSMUST00000219894 1461 ntBASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms