Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Hspa4l-208ENSMUST00000204702 9479 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Mir1894-201ENSMUST00000122802 81 ntBASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm34086-201ENSMUST00000196486 743 ntTSL 3 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm19184-201ENSMUST00000196798 928 ntBASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col28a1Q2UY11 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm7224-201ENSMUST00000121359 2066 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Dnaic2-202ENSMUST00000092469 2799 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm9630-201ENSMUST00000178304 885 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm45331-201ENSMUST00000209868 554 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm17794-201ENSMUST00000220252 955 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm9200-201ENSMUST00000118513 1354 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Gm5912-201ENSMUST00000122282 1438 ntBASIC12.28□□□□□ -0.44
Col28a1Q2UY11 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Cdc25c-201ENSMUST00000060710 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
Col28a1Q2UY11 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Gm26464-201ENSMUST00000157094 305 ntBASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Gm43094-201ENSMUST00000196549 921 ntBASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col28a1Q2UY11 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms