Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cd40lgP27548 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Cd40lgP27548 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.71□□□□□ -0.54
Cd40lgP27548 Akap12-202ENSMUST00000215696 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cd40lgP27548 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Cd40lgP27548 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.7□□□□□ -0.54
Cd40lgP27548 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 AC101945.2-201ENSMUST00000227886 1377 ntBASIC11.7□□□□□ -0.54
Cd40lgP27548 Gm43463-201ENSMUST00000195967 1803 ntBASIC11.7□□□□□ -0.54
Cd40lgP27548 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Taok1-202ENSMUST00000058496 12409 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Rab3c-202ENSMUST00000223922 2398 ntBASIC11.7□□□□□ -0.54
Cd40lgP27548 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
Cd40lgP27548 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cd40lgP27548 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.69□□□□□ -0.54
Cd40lgP27548 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm16479-201ENSMUST00000121706 932 ntBASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm4768-201ENSMUST00000206199 686 ntBASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Dctn4-202ENSMUST00000223590 1530 ntBASIC11.69□□□□□ -0.54
Cd40lgP27548 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Mettl17-206ENSMUST00000164902 1461 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cd40lgP27548 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.69□□□□□ -0.54
Cd40lgP27548 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
Cd40lgP27548 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms