Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Gm7666-201ENSMUST00000146631 819 ntBASIC15.22■□□□□ 0.03
Col4a1P02463 AA387200-201ENSMUST00000147463 1177 ntTSL 3 BASIC15.22■□□□□ 0.03
Col4a1P02463 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col4a1P02463 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC15.22■□□□□ 0.03
Col4a1P02463 Gm18367-201ENSMUST00000176139 600 ntBASIC15.22■□□□□ 0.03
Col4a1P02463 Gm4310-201ENSMUST00000177847 889 ntBASIC15.22■□□□□ 0.03
Col4a1P02463 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Col4a1P02463 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC15.22■□□□□ 0.03
Col4a1P02463 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Col4a1P02463 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col4a1P02463 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Col4a1P02463 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col4a1P02463 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Col4a1P02463 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Susd3-201ENSMUST00000021816 1317 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.03
Col4a1P02463 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
Col4a1P02463 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
Col4a1P02463 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Gm8731-201ENSMUST00000118088 412 ntBASIC15.21■□□□□ 0.03
Col4a1P02463 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC15.21■□□□□ 0.03
Col4a1P02463 Gm15881-201ENSMUST00000148792 942 ntBASIC15.21■□□□□ 0.03
Col4a1P02463 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
Col4a1P02463 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Col4a1P02463 Gm42629-201ENSMUST00000199063 1102 ntBASIC15.21■□□□□ 0.03
Col4a1P02463 Gm45219-201ENSMUST00000205602 465 ntBASIC15.21■□□□□ 0.03
Col4a1P02463 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC15.21■□□□□ 0.03
Col4a1P02463 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 AC121960.1-201ENSMUST00000227982 564 ntBASIC15.21■□□□□ 0.03
Col4a1P02463 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Col4a1P02463 AC173482.6-201ENSMUST00000225889 1741 ntBASIC15.21■□□□□ 0.03
Col4a1P02463 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col4a1P02463 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC15.21■□□□□ 0.02
Col4a1P02463 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col4a1P02463 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col4a1P02463 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Col4a1P02463 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.21■□□□□ 0.02
Col4a1P02463 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
Col4a1P02463 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col4a1P02463 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 AC154671.1-201ENSMUST00000228617 1578 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC15.2■□□□□ 0.02
Col4a1P02463 Gm23085-201ENSMUST00000157849 293 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC15.2■□□□□ 0.02
Col4a1P02463 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Ighv4-2-201ENSMUST00000192975 362 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Gm37458-201ENSMUST00000194055 410 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Gm44980-201ENSMUST00000205826 314 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Gm5705-201ENSMUST00000066241 711 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Snora73b-201ENSMUST00000083419 205 ntBASIC15.2■□□□□ 0.02
Col4a1P02463 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col4a1P02463 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col4a1P02463 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col4a1P02463 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col4a1P02463 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col4a1P02463 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col4a1P02463 Gm12856-201ENSMUST00000119471 1293 ntBASIC15.19■□□□□ 0.02
Col4a1P02463 Gm14460-201ENSMUST00000121511 639 ntBASIC15.19■□□□□ 0.02
Col4a1P02463 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col4a1P02463 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC15.19■□□□□ 0.02
Col4a1P02463 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col4a1P02463 Mir6958-201ENSMUST00000184207 73 ntBASIC15.19■□□□□ 0.02
Col4a1P02463 Gm45575-201ENSMUST00000210283 548 ntBASIC15.19■□□□□ 0.02
Col4a1P02463 Gm7395-201ENSMUST00000216059 1045 ntBASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms