Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Mir6998-201ENSMUST00000183343 64 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Gm5621-201ENSMUST00000187303 640 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Gm43692-201ENSMUST00000198236 1062 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Diablo-210ENSMUST00000200247 748 ntTSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Gm270-201ENSMUST00000223010 976 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 AC133602.1-201ENSMUST00000227510 509 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Col5a1O88207 Rpl10-ps3-201ENSMUST00000076364 768 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Col5a1O88207 Snora73b-201ENSMUST00000083419 205 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Col5a1O88207 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
Col5a1O88207 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC11.23□□□□□ -0.61
Col5a1O88207 Mt1-202ENSMUST00000211807 1085 ntBASIC11.23□□□□□ -0.61
Col5a1O88207 Gm19640-201ENSMUST00000214849 464 ntBASIC11.23□□□□□ -0.61
Col5a1O88207 Gm2517-201ENSMUST00000215651 348 ntBASIC11.23□□□□□ -0.61
Col5a1O88207 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC11.23□□□□□ -0.61
Col5a1O88207 AC171241.1-201ENSMUST00000228144 1166 ntBASIC11.23□□□□□ -0.61
Col5a1O88207 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC11.23□□□□□ -0.61
Col5a1O88207 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Col5a1O88207 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Gm11354-201ENSMUST00000121974 422 ntBASIC11.23□□□□□ -0.61
Col5a1O88207 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.23□□□□□ -0.61
Col5a1O88207 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Mir483-201ENSMUST00000093631 73 ntBASIC11.23□□□□□ -0.61
Col5a1O88207 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC11.23□□□□□ -0.61
Col5a1O88207 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Col5a1O88207 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Col5a1O88207 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col5a1O88207 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 114.3 ms