Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gm16202-201ENSMUST00000117532 544 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gm6334-201ENSMUST00000207083 228 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gm10608-202ENSMUST00000213924 676 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gm14350-201ENSMUST00000116642 640 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Rn7s1-201ENSMUST00000174924 300 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Rn7s2-201ENSMUST00000175032 300 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gm26461-201ENSMUST00000175064 290 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gm9176-201ENSMUST00000219955 1120 ntBASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Nudt22-201ENSMUST00000041686 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Map6-205ENSMUST00000207883 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Vps53Q8CCB4 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 AC154747.3-201ENSMUST00000224471 3470 ntBASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm6203-201ENSMUST00000209575 1342 ntBASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm13786-201ENSMUST00000122371 333 ntBASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm27320-201ENSMUST00000184892 109 ntBASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm7118-201ENSMUST00000200167 1003 ntBASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
Vps53Q8CCB4 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms