Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Trim28Q62318 Gm23949-201ENSMUST00000104027 127 ntBASIC16.32■□□□□ 0.2
Trim28Q62318 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC16.32■□□□□ 0.2
Trim28Q62318 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim28Q62318 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Gm38094-201ENSMUST00000195864 2978 ntBASIC16.32■□□□□ 0.2
Trim28Q62318 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim28Q62318 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Trim28Q62318 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trim28Q62318 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Trim28Q62318 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim28Q62318 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC16.31■□□□□ 0.2
Trim28Q62318 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim28Q62318 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trim28Q62318 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim28Q62318 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim28Q62318 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim28Q62318 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim28Q62318 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC16.3■□□□□ 0.2
Trim28Q62318 Gm38577-201ENSMUST00000221531 4545 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trim28Q62318 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
Trim28Q62318 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim28Q62318 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC16.3■□□□□ 0.2
Trim28Q62318 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC16.3■□□□□ 0.2
Trim28Q62318 Rprl1-201ENSMUST00000158050 327 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim28Q62318 AU022133-201ENSMUST00000200601 873 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
Trim28Q62318 CT025694.1-201ENSMUST00000226188 934 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Mfsd13b-201ENSMUST00000033166 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Gm45266-201ENSMUST00000210111 2173 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 AC116503.1-201ENSMUST00000215445 2192 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim28Q62318 AC123619.2-202ENSMUST00000225097 1568 ntBASIC16.3■□□□□ 0.2
Trim28Q62318 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim28Q62318 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 B9d1os-201ENSMUST00000137010 674 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim28Q62318 Gm17040-202ENSMUST00000170597 889 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
Trim28Q62318 Gm29615-201ENSMUST00000185371 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28224-201ENSMUST00000186078 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm29001-201ENSMUST00000186177 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28292-201ENSMUST00000186593 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28101-201ENSMUST00000187608 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm29076-201ENSMUST00000187689 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28302-201ENSMUST00000187931 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28646-201ENSMUST00000188220 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28205-201ENSMUST00000189177 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm29032-201ENSMUST00000189797 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm28695-201ENSMUST00000190300 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Gm37448-201ENSMUST00000192795 697 ntBASIC16.29■□□□□ 0.2
Trim28Q62318 Olfr1347-205ENSMUST00000220413 964 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 54.8 ms