Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC16.33■□□□□ 0.2
Col18a1P39061 Gm12663-201ENSMUST00000118481 958 ntBASIC16.33■□□□□ 0.2
Col18a1P39061 Cd55b-202ENSMUST00000119432 986 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Gm12712-201ENSMUST00000120676 801 ntBASIC16.33■□□□□ 0.2
Col18a1P39061 Gm9089-201ENSMUST00000122027 526 ntBASIC16.33■□□□□ 0.2
Col18a1P39061 Gm5706-201ENSMUST00000181525 993 ntBASIC16.33■□□□□ 0.2
Col18a1P39061 Gm28833-201ENSMUST00000189671 559 ntBASIC16.33■□□□□ 0.2
Col18a1P39061 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC16.33■□□□□ 0.2
Col18a1P39061 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC16.33■□□□□ 0.2
Col18a1P39061 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Col18a1P39061 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Col18a1P39061 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col18a1P39061 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.32■□□□□ 0.2
Col18a1P39061 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Col18a1P39061 Gm9673-201ENSMUST00000119287 781 ntBASIC16.32■□□□□ 0.2
Col18a1P39061 Gm26368-201ENSMUST00000157826 118 ntBASIC16.32■□□□□ 0.2
Col18a1P39061 Gm24809-201ENSMUST00000175318 271 ntBASIC16.32■□□□□ 0.2
Col18a1P39061 Gm42511-201ENSMUST00000196160 234 ntBASIC16.32■□□□□ 0.2
Col18a1P39061 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Col18a1P39061 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
Col18a1P39061 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
Col18a1P39061 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Gm8899-201ENSMUST00000214635 1332 ntBASIC16.32■□□□□ 0.2
Col18a1P39061 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Gm18227-201ENSMUST00000211082 1468 ntBASIC16.32■□□□□ 0.2
Col18a1P39061 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Col18a1P39061 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Col18a1P39061 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col18a1P39061 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Camk1d-202ENSMUST00000114987 1295 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC16.31■□□□□ 0.2
Col18a1P39061 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Mir6941-201ENSMUST00000184711 59 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 Gm43380-201ENSMUST00000200421 220 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 Gm45135-201ENSMUST00000206787 1184 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 AC138716.2-201ENSMUST00000226670 1016 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 Spata46-201ENSMUST00000056991 771 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Col18a1P39061 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col18a1P39061 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Col18a1P39061 Gm11783-201ENSMUST00000119549 885 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 Gm5909-201ENSMUST00000119768 1281 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC16.31■□□□□ 0.2
Col18a1P39061 Gm15524-201ENSMUST00000159874 463 ntTSL 3 BASIC16.31■□□□□ 0.2
Col18a1P39061 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC16.31■□□□□ 0.2
Col18a1P39061 Gm28901-201ENSMUST00000188810 474 ntTSL 5 BASIC16.31■□□□□ 0.2
Col18a1P39061 Gm8197-202ENSMUST00000193422 934 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 Trav11n-201ENSMUST00000200113 343 ntBASIC16.31■□□□□ 0.2
Col18a1P39061 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC16.31■□□□□ 0.2
Col18a1P39061 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Pex3-207ENSMUST00000170376 1381 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col18a1P39061 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC16.31■□□□□ 0.2
Col18a1P39061 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 AC164107.1-201ENSMUST00000227730 2161 ntBASIC16.3■□□□□ 0.2
Col18a1P39061 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col18a1P39061 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC16.3■□□□□ 0.2
Col18a1P39061 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col18a1P39061 Gm9034-201ENSMUST00000182071 1005 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms