Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Gm8894-201ENSMUST00000074642 666 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Col5a1O88207 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Gm21811-201ENSMUST00000096485 930 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Gm38355-201ENSMUST00000192514 1570 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Gm13142-201ENSMUST00000117213 1453 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC11.26□□□□□ -0.61
Col5a1O88207 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC11.25□□□□□ -0.61
Col5a1O88207 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
Col5a1O88207 CT571245.2-201ENSMUST00000218421 305 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Gm6867-201ENSMUST00000219165 425 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Olfr1347-205ENSMUST00000220413 964 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC11.25□□□□□ -0.61
Col5a1O88207 AC154290.1-201ENSMUST00000223786 1240 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Ngdn-201ENSMUST00000022815 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Prrxl1-205ENSMUST00000228878 723 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Col5a1O88207 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Col5a1O88207 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC11.25□□□□□ -0.61
Col5a1O88207 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Col5a1O88207 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC11.25□□□□□ -0.61
Col5a1O88207 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.25□□□□□ -0.61
Col5a1O88207 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC11.25□□□□□ -0.61
Col5a1O88207 Gm18038-201ENSMUST00000197900 485 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 Gm42779-201ENSMUST00000198807 406 ntBASIC11.25□□□□□ -0.61
Col5a1O88207 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC11.25□□□□□ -0.61
Col5a1O88207 Tex30-201ENSMUST00000027215 1272 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC11.25□□□□□ -0.61
Col5a1O88207 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.25□□□□□ -0.61
Col5a1O88207 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Col5a1O88207 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.24□□□□□ -0.61
Col5a1O88207 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC11.24□□□□□ -0.61
Col5a1O88207 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Col5a1O88207 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms