Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Fabp4-201ENSMUST00000029041 896 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.75□□□□□ -0.21
Trim54Q9ERP3 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Trim54Q9ERP3 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gm14921-201ENSMUST00000118643 908 ntBASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gm37201-201ENSMUST00000191845 523 ntBASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gm18753-201ENSMUST00000201000 566 ntBASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gm43068-201ENSMUST00000201095 1273 ntBASIC13.74□□□□□ -0.21
Trim54Q9ERP3 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Gm8712-201ENSMUST00000221090 701 ntBASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Trim54Q9ERP3 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gm14109-201ENSMUST00000118814 309 ntBASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gm16296-201ENSMUST00000159905 325 ntBASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gm27341-201ENSMUST00000183570 106 ntBASIC13.73□□□□□ -0.21
Trim54Q9ERP3 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.73□□□□□ -0.21
Trim54Q9ERP3 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Trim54Q9ERP3 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Trim54Q9ERP3 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 77.3 ms