Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.79□□□□□ -0.04
Vps53Q8CCB4 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.79□□□□□ -0.04
Vps53Q8CCB4 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 AC093022.1-201ENSMUST00000226949 1072 ntBASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Vps53Q8CCB4 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Saa3-202ENSMUST00000210913 2200 ntTSL 3 BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Gm4935-201ENSMUST00000221316 1198 ntBASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Gm10305-201ENSMUST00000195331 2475 ntBASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Vps53Q8CCB4 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Arhgap10-202ENSMUST00000210519 2295 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Vps53Q8CCB4 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm7029-201ENSMUST00000173226 450 ntBASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.77□□□□□ -0.05
Vps53Q8CCB4 AC138604.1-201ENSMUST00000226969 739 ntBASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
Vps53Q8CCB4 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Gm43677-201ENSMUST00000198098 2378 ntBASIC14.76□□□□□ -0.05
Vps53Q8CCB4 Clcn6-201ENSMUST00000030879 3306 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms