Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Retreg1-206ENSMUST00000228306 1430 ntBASIC14.94□□□□□ -0.02
Trim56Q80VI1 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm24231-201ENSMUST00000104315 133 ntBASIC14.94□□□□□ -0.02
Trim56Q80VI1 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm7783-201ENSMUST00000204795 781 ntBASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm30285-201ENSMUST00000214614 422 ntBASIC14.94□□□□□ -0.02
Trim56Q80VI1 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Gm26035-201ENSMUST00000083065 308 ntBASIC14.94□□□□□ -0.02
Trim56Q80VI1 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC14.94□□□□□ -0.02
Trim56Q80VI1 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gm22323-201ENSMUST00000103832 109 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Rmrp-201ENSMUST00000157463 271 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gm37259-201ENSMUST00000193903 849 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gm3961-201ENSMUST00000204425 994 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gm21769-201ENSMUST00000211922 111 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 AL732506.1-201ENSMUST00000226420 281 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 AC113031.8-201ENSMUST00000227856 631 ntBASIC14.93□□□□□ -0.02
Trim56Q80VI1 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Trim56Q80VI1 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Gm24255-201ENSMUST00000104481 128 ntBASIC14.92□□□□□ -0.02
Trim56Q80VI1 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Gm13350-201ENSMUST00000120519 479 ntBASIC14.92□□□□□ -0.02
Trim56Q80VI1 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Gm9022-201ENSMUST00000182482 992 ntBASIC14.92□□□□□ -0.02
Trim56Q80VI1 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.92□□□□□ -0.02
Trim56Q80VI1 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Gm43721-201ENSMUST00000199677 2313 ntBASIC14.92□□□□□ -0.02
Trim56Q80VI1 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC14.92□□□□□ -0.02
Trim56Q80VI1 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Trim56Q80VI1 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms