Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Gm5780-201ENSMUST00000217774 1834 ntBASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Gm27731-201ENSMUST00000185192 107 ntBASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Usp49Q6P9L4 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Gm43579-201ENSMUST00000202387 1307 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Gm37827-201ENSMUST00000194486 1542 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Gm14660-201ENSMUST00000119809 575 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Gm11964-201ENSMUST00000120982 444 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 AC166349.1-201ENSMUST00000220866 695 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Snora73a-201ENSMUST00000082453 205 ntBASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Usp49Q6P9L4 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 AC126262.1-201ENSMUST00000221802 1904 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm23931-201ENSMUST00000103842 109 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm13226-201ENSMUST00000117838 404 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm12384-201ENSMUST00000119228 919 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm7809-201ENSMUST00000153199 742 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm25927-201ENSMUST00000175058 117 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Gm24526-201ENSMUST00000082921 158 ntBASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Usp49Q6P9L4 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms