Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Gm18734-201ENSMUST00000172937 808 ntBASIC10.83□□□□□ -0.68
Col8a1Q00780 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Gm18893-201ENSMUST00000198416 943 ntBASIC10.83□□□□□ -0.68
Col8a1Q00780 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 AC107638.1-201ENSMUST00000213690 1061 ntBASIC10.83□□□□□ -0.68
Col8a1Q00780 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC10.83□□□□□ -0.68
Col8a1Q00780 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC10.83□□□□□ -0.68
Col8a1Q00780 AC159103.1-201ENSMUST00000228325 429 ntBASIC10.83□□□□□ -0.68
Col8a1Q00780 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Col8a1Q00780 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Col8a1Q00780 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Ntrk2-208ENSMUST00000225583 2719 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Col8a1Q00780 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Ptges3l-203ENSMUST00000107252 853 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm10051-201ENSMUST00000145209 414 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 AC166992.1-201ENSMUST00000216356 565 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 AC154222.2-201ENSMUST00000225848 607 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 CT009713.10-201ENSMUST00000225013 1986 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC10.82□□□□□ -0.68
Col8a1Q00780 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Gm3287-205ENSMUST00000228893 1332 ntBASIC10.82□□□□□ -0.68
Col8a1Q00780 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Col8a1Q00780 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Gm9947-201ENSMUST00000067599 2920 ntBASIC10.81□□□□□ -0.68
Col8a1Q00780 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Col8a1Q00780 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Col8a1Q00780 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Col8a1Q00780 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Col8a1Q00780 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Col8a1Q00780 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Col8a1Q00780 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms