Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Sox3P53784 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC12.18□□□□□ -0.46
Sox3P53784 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.18□□□□□ -0.46
Sox3P53784 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Sox3P53784 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Gm4993-201ENSMUST00000118719 1174 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Gm12012-201ENSMUST00000118857 1066 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Gm12217-201ENSMUST00000118858 696 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Gm9431-201ENSMUST00000119765 1051 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC12.17□□□□□ -0.46
Sox3P53784 Gm14726-201ENSMUST00000120623 896 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC12.17□□□□□ -0.46
Sox3P53784 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC12.17□□□□□ -0.46
Sox3P53784 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Sox3P53784 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Rn7sk-201ENSMUST00000083103 331 ntBASIC12.17□□□□□ -0.46
Sox3P53784 Gm26315-201ENSMUST00000083890 321 ntBASIC12.17□□□□□ -0.46
Sox3P53784 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sox3P53784 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Sox3P53784 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.17□□□□□ -0.46
Sox3P53784 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.17□□□□□ -0.46
Sox3P53784 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Sox3P53784 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Sox3P53784 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.16□□□□□ -0.46
Sox3P53784 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Sox3P53784 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Sox3P53784 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Sox3P53784 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Sox3P53784 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Gm5422-201ENSMUST00000050717 2721 ntBASIC12.16□□□□□ -0.46
Sox3P53784 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Gm8805-201ENSMUST00000117848 313 ntBASIC12.16□□□□□ -0.46
Sox3P53784 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC12.16□□□□□ -0.46
Sox3P53784 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC12.16□□□□□ -0.46
Sox3P53784 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Sox3P53784 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 1110038B12Rik-203ENSMUST00000173070 434 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.16□□□□□ -0.46
Sox3P53784 Gstp-ps-201ENSMUST00000195526 631 ntBASIC12.16□□□□□ -0.46
Sox3P53784 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC12.16□□□□□ -0.46
Sox3P53784 Gm10109-202ENSMUST00000206890 1211 ntBASIC12.16□□□□□ -0.46
Sox3P53784 1700112L15Rik-201ENSMUST00000212067 510 ntBASIC12.16□□□□□ -0.46
Sox3P53784 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Sox3P53784 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Sox3P53784 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC12.16□□□□□ -0.46
Sox3P53784 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms