Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 AC154290.1-201ENSMUST00000223786 1240 ntBASIC19.16■□□□□ 0.66
Cux1P53564 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Cux1P53564 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Gm45638-201ENSMUST00000211507 2878 ntBASIC19.16■□□□□ 0.66
Cux1P53564 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Gm5421-201ENSMUST00000181698 2354 ntBASIC19.16■□□□□ 0.66
Cux1P53564 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Usp35-201ENSMUST00000139582 4262 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC19.16■□□□□ 0.66
Cux1P53564 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Cux1P53564 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Gm44065-201ENSMUST00000203184 3527 ntBASIC19.16■□□□□ 0.66
Cux1P53564 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Brsk1-204ENSMUST00000205666 1398 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC19.16■□□□□ 0.66
Cux1P53564 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cux1P53564 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Cux1P53564 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC19.15■□□□□ 0.66
Cux1P53564 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Cux1P53564 Ighv1-48-201ENSMUST00000191795 294 ntBASIC19.15■□□□□ 0.66
Cux1P53564 Gm38228-201ENSMUST00000193169 1293 ntBASIC19.15■□□□□ 0.66
Cux1P53564 Gm42629-201ENSMUST00000199063 1102 ntBASIC19.15■□□□□ 0.66
Cux1P53564 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Ormdl2-201ENSMUST00000026409 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Cux1P53564 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC19.15■□□□□ 0.66
Cux1P53564 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Cux1P53564 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC19.15■□□□□ 0.66
Cux1P53564 Gm22138-201ENSMUST00000158748 128 ntBASIC19.15■□□□□ 0.66
Cux1P53564 Gm37695-201ENSMUST00000191765 530 ntTSL 5 BASIC19.15■□□□□ 0.66
Cux1P53564 Gm6905-201ENSMUST00000205729 511 ntBASIC19.15■□□□□ 0.66
Cux1P53564 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cux1P53564 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Cux1P53564 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Cux1P53564 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cux1P53564 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
Cux1P53564 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC19.14■□□□□ 0.66
Cux1P53564 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC19.14■□□□□ 0.65
Cux1P53564 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Cux1P53564 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Gm11511-201ENSMUST00000118146 540 ntBASIC19.14■□□□□ 0.65
Cux1P53564 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Gm5778-201ENSMUST00000171003 1072 ntBASIC19.14■□□□□ 0.65
Cux1P53564 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Cux1P53564 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Gm45398-201ENSMUST00000210561 165 ntBASIC19.14■□□□□ 0.65
Cux1P53564 AC159103.1-201ENSMUST00000228325 429 ntBASIC19.14■□□□□ 0.65
Cux1P53564 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Cux1P53564 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Cux1P53564 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cux1P53564 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Gm43677-201ENSMUST00000198098 2378 ntBASIC19.13■□□□□ 0.65
Cux1P53564 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC19.13■□□□□ 0.65
Cux1P53564 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cux1P53564 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC19.13■□□□□ 0.65
Cux1P53564 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms