Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC15.13■□□□□ 0.01
Rfx1P48377 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rfx1P48377 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC15.12■□□□□ 0.01
Rfx1P48377 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC15.12■□□□□ 0.01
Rfx1P48377 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC15.12■□□□□ 0.01
Rfx1P48377 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC15.12■□□□□ 0.01
Rfx1P48377 AC153961.1-201ENSMUST00000217760 385 ntBASIC15.12■□□□□ 0.01
Rfx1P48377 Gm6218-201ENSMUST00000219812 628 ntBASIC15.12■□□□□ 0.01
Rfx1P48377 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Fbxl22-201ENSMUST00000056890 3935 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Brap-202ENSMUST00000111765 3861 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rfx1P48377 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Rfx1P48377 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC15.11■□□□□ 0.01
Rfx1P48377 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Rfx1P48377 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC15.11■□□□□ 0.01
Rfx1P48377 Gm15371-201ENSMUST00000117057 784 ntBASIC15.11■□□□□ 0.01
Rfx1P48377 Ldha-ps-201ENSMUST00000119390 995 ntBASIC15.11■□□□□ 0.01
Rfx1P48377 Gm12341-201ENSMUST00000119724 503 ntBASIC15.11■□□□□ 0.01
Rfx1P48377 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC15.11■□□□□ 0.01
Rfx1P48377 Gm6983-201ENSMUST00000214912 628 ntBASIC15.11■□□□□ 0.01
Rfx1P48377 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC15.11■□□□□ 0.01
Rfx1P48377 Gm26035-201ENSMUST00000083065 308 ntBASIC15.11■□□□□ 0.01
Rfx1P48377 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Insrr-202ENSMUST00000107582 4694 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Rfx1P48377 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Rfx1P48377 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 AC101945.2-201ENSMUST00000227886 1377 ntBASIC15.11■□□□□ 0.01
Rfx1P48377 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rfx1P48377 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC15.1■□□□□ 0.01
Rfx1P48377 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC15.1■□□□□ 0.01
Rfx1P48377 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rfx1P48377 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC15.1■□□□□ 0.01
Rfx1P48377 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Rfx1P48377 AC073947.1-201ENSMUST00000216991 649 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30.2 ms