Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm45776-201ENSMUST00000212366 1522 ntBASIC10.37□□□□□ -0.75
Sdc1P18828 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
Sdc1P18828 Gm45496-201ENSMUST00000209918 2917 ntBASIC10.37□□□□□ -0.75
Sdc1P18828 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Cobl-202ENSMUST00000109650 5271 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Gm4735-201ENSMUST00000138679 1302 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Gm5855-201ENSMUST00000200240 1305 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 Gm38376-201ENSMUST00000195493 2253 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Cyp26b1-202ENSMUST00000168003 4170 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Cyp26b1-201ENSMUST00000077705 4157 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC10.36□□□□□ -0.75
Sdc1P18828 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC10.36□□□□□ -0.75
Sdc1P18828 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Gm11452-201ENSMUST00000122376 690 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC10.36□□□□□ -0.75
Sdc1P18828 Ube2m-208ENSMUST00000165394 1228 ntTSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Gm27772-201ENSMUST00000184900 187 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 Gm10766-202ENSMUST00000194123 606 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 C530043K16Rik-201ENSMUST00000201865 3109 ntBASIC10.36□□□□□ -0.75
Sdc1P18828 Anks1b-224ENSMUST00000182960 3397 ntTSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 C2cd5-203ENSMUST00000171349 4292 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
Sdc1P18828 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
Sdc1P18828 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC10.35□□□□□ -0.75
Sdc1P18828 Prdm1-201ENSMUST00000039174 5281 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
Sdc1P18828 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Stab1-201ENSMUST00000036618 7999 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm36957-201ENSMUST00000192982 2824 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Tnc-202ENSMUST00000107371 2928 ntTSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC10.35□□□□□ -0.75
Sdc1P18828 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm43858-201ENSMUST00000199418 1778 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm12428-201ENSMUST00000119844 727 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC10.35□□□□□ -0.75
Sdc1P18828 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC10.35□□□□□ -0.75
Sdc1P18828 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm44945-201ENSMUST00000206764 1187 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm17870-201ENSMUST00000219489 1174 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 AC090659.2-201ENSMUST00000225378 1186 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC10.35□□□□□ -0.75
Sdc1P18828 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 AC124577.2-201ENSMUST00000217413 2420 ntBASIC10.35□□□□□ -0.75
Sdc1P18828 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
Sdc1P18828 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Retrieved 100 of 76,532 protein–RNA pairs in 49.5 ms