Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Col5a1O88207 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.28□□□□□ -0.6
Col5a1O88207 Gstm4-202ENSMUST00000106670 777 ntTSL 3 BASIC11.28□□□□□ -0.6
Col5a1O88207 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm11246-201ENSMUST00000120880 345 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Rdh9-203ENSMUST00000136223 1276 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC11.28□□□□□ -0.6
Col5a1O88207 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC11.28□□□□□ -0.6
Col5a1O88207 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm29083-201ENSMUST00000189205 733 ntTSL 3 BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC11.28□□□□□ -0.6
Col5a1O88207 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC11.28□□□□□ -0.6
Col5a1O88207 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Col5a1O88207 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm26035-201ENSMUST00000083065 308 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Col5a1O88207 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.28□□□□□ -0.6
Col5a1O88207 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 AC154262.2-202ENSMUST00000225158 1331 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm15573-201ENSMUST00000119487 540 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Gm12969-201ENSMUST00000120199 1004 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm28324-201ENSMUST00000187913 264 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Gm7902-201ENSMUST00000198842 947 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm45398-201ENSMUST00000210561 165 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 Gm18974-201ENSMUST00000221478 1031 ntBASIC11.28□□□□□ -0.6
Col5a1O88207 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC11.28□□□□□ -0.6
Col5a1O88207 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col5a1O88207 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC11.27□□□□□ -0.6
Col5a1O88207 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col5a1O88207 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col5a1O88207 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col5a1O88207 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC11.27□□□□□ -0.6
Col5a1O88207 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.27□□□□□ -0.6
Col5a1O88207 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col5a1O88207 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col5a1O88207 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC11.27□□□□□ -0.61
Col5a1O88207 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
Col5a1O88207 Gm24231-201ENSMUST00000104315 133 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC11.27□□□□□ -0.61
Col5a1O88207 Gm12501-201ENSMUST00000119163 529 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Gm6485-201ENSMUST00000160676 439 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 Mir7076-201ENSMUST00000183519 74 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 Gm11634-202ENSMUST00000209862 573 ntAPPRIS P5 TSL 5 BASIC11.27□□□□□ -0.61
Col5a1O88207 CT009713.8-202ENSMUST00000224732 385 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 AC154184.3-201ENSMUST00000225620 1090 ntBASIC11.27□□□□□ -0.61
Col5a1O88207 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
Col5a1O88207 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col5a1O88207 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC11.27□□□□□ -0.61
Col5a1O88207 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col5a1O88207 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Gm13600-201ENSMUST00000117949 744 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC11.26□□□□□ -0.61
Col5a1O88207 Mir1956-201ENSMUST00000157748 65 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Gm10731-201ENSMUST00000181171 448 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Gm27530-201ENSMUST00000184096 98 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC11.26□□□□□ -0.61
Col5a1O88207 Gm45120-201ENSMUST00000208880 408 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Gm9139-201ENSMUST00000218817 700 ntBASIC11.26□□□□□ -0.61
Col5a1O88207 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms