Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cstf1Q99LC2 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cstf1Q99LC2 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cstf1Q99LC2 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Cstf1Q99LC2 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Cstf1Q99LC2 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Cstf1Q99LC2 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Gm43137-201ENSMUST00000198052 594 ntBASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Cstf1Q99LC2 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.04■□□□□ 0.96
Cstf1Q99LC2 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cstf1Q99LC2 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cstf1Q99LC2 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
Cstf1Q99LC2 Gm43017-201ENSMUST00000198296 752 ntBASIC21.04■□□□□ 0.96
Cstf1Q99LC2 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Cstf1Q99LC2 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Cstf1Q99LC2 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
Cstf1Q99LC2 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cstf1Q99LC2 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Cstf1Q99LC2 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cstf1Q99LC2 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cstf1Q99LC2 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Mir7075-201ENSMUST00000184187 82 ntBASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Cstf1Q99LC2 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Cstf1Q99LC2 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cstf1Q99LC2 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC21■□□□□ 0.95
Cstf1Q99LC2 Gm5874-201ENSMUST00000096101 508 ntBASIC21■□□□□ 0.95
Cstf1Q99LC2 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cstf1Q99LC2 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cstf1Q99LC2 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Cstf1Q99LC2 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Cstf1Q99LC2 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cstf1Q99LC2 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cstf1Q99LC2 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.98■□□□□ 0.95
Cstf1Q99LC2 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.98■□□□□ 0.95
Cstf1Q99LC2 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Cstf1Q99LC2 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Cstf1Q99LC2 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Cstf1Q99LC2 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Cstf1Q99LC2 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cstf1Q99LC2 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Cstf1Q99LC2 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Cstf1Q99LC2 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms