Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Usp40Q8BWR4 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
Usp40Q8BWR4 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC29.28■■■□□ 2.28
Usp40Q8BWR4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Usp40Q8BWR4 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
Usp40Q8BWR4 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Usp40Q8BWR4 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC29.26■■■□□ 2.27
Usp40Q8BWR4 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC29.26■■■□□ 2.27
Usp40Q8BWR4 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC29.26■■■□□ 2.27
Usp40Q8BWR4 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Usp40Q8BWR4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
Usp40Q8BWR4 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC29.25■■■□□ 2.27
Usp40Q8BWR4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Usp40Q8BWR4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
Usp40Q8BWR4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Usp40Q8BWR4 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC29.23■■■□□ 2.27
Usp40Q8BWR4 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Usp40Q8BWR4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
Usp40Q8BWR4 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
Usp40Q8BWR4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC29.22■■■□□ 2.27
Usp40Q8BWR4 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Usp40Q8BWR4 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
Usp40Q8BWR4 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
Usp40Q8BWR4 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Usp40Q8BWR4 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC29.21■■■□□ 2.27
Usp40Q8BWR4 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
Usp40Q8BWR4 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
Usp40Q8BWR4 Appbp2os-202ENSMUST00000206972 447 ntBASIC29.2■■■□□ 2.26
Usp40Q8BWR4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Usp40Q8BWR4 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
Usp40Q8BWR4 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
Usp40Q8BWR4 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Usp40Q8BWR4 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
Usp40Q8BWR4 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Usp40Q8BWR4 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Gm27454-201ENSMUST00000185090 204 ntBASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Usp40Q8BWR4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Usp40Q8BWR4 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Usp40Q8BWR4 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC29.16■■■□□ 2.26
Usp40Q8BWR4 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC29.16■■■□□ 2.26
Usp40Q8BWR4 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC29.16■■■□□ 2.26
Usp40Q8BWR4 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
Usp40Q8BWR4 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Usp40Q8BWR4 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
Usp40Q8BWR4 Gm12821-201ENSMUST00000120022 600 ntBASIC29.14■■■□□ 2.26
Usp40Q8BWR4 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC29.14■■■□□ 2.26
Usp40Q8BWR4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Usp40Q8BWR4 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
Usp40Q8BWR4 Gm9870-201ENSMUST00000063874 645 ntBASIC29.12■■■□□ 2.25
Usp40Q8BWR4 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
Usp40Q8BWR4 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
Usp40Q8BWR4 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC29.11■■■□□ 2.25
Usp40Q8BWR4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Usp40Q8BWR4 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
Usp40Q8BWR4 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC29.09■■■□□ 2.25
Usp40Q8BWR4 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Usp40Q8BWR4 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Usp40Q8BWR4 Gm45417-201ENSMUST00000209533 758 ntBASIC29.09■■■□□ 2.25
Usp40Q8BWR4 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Usp40Q8BWR4 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
Usp40Q8BWR4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC29.08■■■□□ 2.25
Usp40Q8BWR4 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms