Protein–RNA interactions for Protein: Q80W14

Prpf40b, Pre-mRNA-processing factor 40 homolog B, mousemouse

Predictions only

Length 870 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40bQ80W14 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Prpf40bQ80W14 Golgb1-201ENSMUST00000023534 498 ntBASIC24.25■■□□□ 1.47
Prpf40bQ80W14 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Prpf40bQ80W14 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Prpf40bQ80W14 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Prpf40bQ80W14 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC24.25■■□□□ 1.47
Prpf40bQ80W14 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Prpf40bQ80W14 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40bQ80W14 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC24.23■■□□□ 1.47
Prpf40bQ80W14 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40bQ80W14 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC24.23■■□□□ 1.47
Prpf40bQ80W14 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40bQ80W14 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Prpf40bQ80W14 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40bQ80W14 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40bQ80W14 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40bQ80W14 Gm29257-201ENSMUST00000186115 639 ntBASIC24.22■■□□□ 1.47
Prpf40bQ80W14 Gm10399-202ENSMUST00000202768 748 ntBASIC24.22■■□□□ 1.47
Prpf40bQ80W14 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Prpf40bQ80W14 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC24.21■■□□□ 1.47
Prpf40bQ80W14 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
Prpf40bQ80W14 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Prpf40bQ80W14 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Prpf40bQ80W14 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC24.19■■□□□ 1.46
Prpf40bQ80W14 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Prpf40bQ80W14 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Prpf40bQ80W14 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Prpf40bQ80W14 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Prpf40bQ80W14 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC24.18■■□□□ 1.46
Prpf40bQ80W14 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC24.18■■□□□ 1.46
Prpf40bQ80W14 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Prpf40bQ80W14 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC24.17■■□□□ 1.46
Prpf40bQ80W14 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Prpf40bQ80W14 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Prpf40bQ80W14 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Prpf40bQ80W14 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
Prpf40bQ80W14 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Prpf40bQ80W14 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40bQ80W14 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC24.16■■□□□ 1.46
Prpf40bQ80W14 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40bQ80W14 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Prpf40bQ80W14 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Prpf40bQ80W14 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC24.14■■□□□ 1.45
Prpf40bQ80W14 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.45
Prpf40bQ80W14 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Prpf40bQ80W14 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Prpf40bQ80W14 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Prpf40bQ80W14 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Prpf40bQ80W14 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Gm11847-201ENSMUST00000125165 1119 ntBASIC24.13■■□□□ 1.45
Prpf40bQ80W14 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Prpf40bQ80W14 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Prpf40bQ80W14 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40bQ80W14 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40bQ80W14 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40bQ80W14 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC24.12■■□□□ 1.45
Prpf40bQ80W14 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Prpf40bQ80W14 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC24.11■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 15.4 ms