Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Trim56Q80VI1 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
Trim56Q80VI1 Gm10620-201ENSMUST00000098379 1332 ntBASIC25.06■■□□□ 1.6
Trim56Q80VI1 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Trim56Q80VI1 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Trim56Q80VI1 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Trim56Q80VI1 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Trim56Q80VI1 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
Trim56Q80VI1 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC25.05■■□□□ 1.6
Trim56Q80VI1 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
Trim56Q80VI1 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
Trim56Q80VI1 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC25.04■■□□□ 1.6
Trim56Q80VI1 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC25.04■■□□□ 1.6
Trim56Q80VI1 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Gm37415-201ENSMUST00000192265 2054 ntBASIC25.03■■□□□ 1.6
Trim56Q80VI1 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trim56Q80VI1 Etf1-202ENSMUST00000180351 108 ntBASIC25.02■■□□□ 1.6
Trim56Q80VI1 Gm10399-202ENSMUST00000202768 748 ntBASIC25.02■■□□□ 1.6
Trim56Q80VI1 AC116713.1-201ENSMUST00000215074 430 ntBASIC25.02■■□□□ 1.6
Trim56Q80VI1 Gm40881-201ENSMUST00000223397 166 ntBASIC25.02■■□□□ 1.6
Trim56Q80VI1 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Trim56Q80VI1 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
Trim56Q80VI1 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Trim56Q80VI1 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Trim56Q80VI1 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Trim56Q80VI1 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Trim56Q80VI1 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Trim56Q80VI1 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Trim56Q80VI1 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Trim56Q80VI1 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC25.01■■□□□ 1.59
Trim56Q80VI1 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Trim56Q80VI1 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Trim56Q80VI1 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC25■■□□□ 1.59
Trim56Q80VI1 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
Trim56Q80VI1 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC25■■□□□ 1.59
Trim56Q80VI1 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Trim56Q80VI1 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Trim56Q80VI1 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Trim56Q80VI1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Trim56Q80VI1 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Trim56Q80VI1 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trim56Q80VI1 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trim56Q80VI1 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trim56Q80VI1 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trim56Q80VI1 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Trim56Q80VI1 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Trim56Q80VI1 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Trim56Q80VI1 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC24.96■■□□□ 1.59
Trim56Q80VI1 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
Trim56Q80VI1 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.58
Trim56Q80VI1 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
Trim56Q80VI1 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC24.95■■□□□ 1.58
Trim56Q80VI1 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC24.95■■□□□ 1.58
Trim56Q80VI1 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC24.95■■□□□ 1.58
Trim56Q80VI1 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Trim56Q80VI1 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Trim56Q80VI1 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC24.94■■□□□ 1.58
Trim56Q80VI1 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Trim56Q80VI1 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC24.93■■□□□ 1.58
Trim56Q80VI1 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trim56Q80VI1 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trim56Q80VI1 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trim56Q80VI1 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trim56Q80VI1 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Trim56Q80VI1 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Trim56Q80VI1 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Trim56Q80VI1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Dmtn-209ENSMUST00000228295 2572 ntBASIC24.9■■□□□ 1.58
Trim56Q80VI1 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Gm7417-201ENSMUST00000192950 473 ntBASIC24.9■■□□□ 1.58
Trim56Q80VI1 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trim56Q80VI1 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
Trim56Q80VI1 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.58
Trim56Q80VI1 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Trim56Q80VI1 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Trim56Q80VI1 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC24.89■■□□□ 1.58
Trim56Q80VI1 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Trim56Q80VI1 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC24.89■■□□□ 1.57
Trim56Q80VI1 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 13.4 ms