Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Scaf4Q6PFF0 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Scaf4Q6PFF0 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scaf4Q6PFF0 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scaf4Q6PFF0 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.69■□□□□ 0.9
Scaf4Q6PFF0 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scaf4Q6PFF0 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.67■□□□□ 0.9
Scaf4Q6PFF0 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Scarna2-201ENSMUST00000157560 414 ntBASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scaf4Q6PFF0 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Gm16437-201ENSMUST00000025669 507 ntBASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Gm9806-201ENSMUST00000051080 552 ntBASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Scaf4Q6PFF0 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Scaf4Q6PFF0 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Scaf4Q6PFF0 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scaf4Q6PFF0 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scaf4Q6PFF0 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scaf4Q6PFF0 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Scaf4Q6PFF0 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms