Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Rtl3Q6P1Y1 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.74■■□□□ 1.07
Rtl3Q6P1Y1 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Rtl3Q6P1Y1 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Rtl3Q6P1Y1 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rtl3Q6P1Y1 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rtl3Q6P1Y1 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Rtl3Q6P1Y1 Etf1-202ENSMUST00000180351 108 ntBASIC21.71■■□□□ 1.07
Rtl3Q6P1Y1 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Rtl3Q6P1Y1 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Rtl3Q6P1Y1 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rtl3Q6P1Y1 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rtl3Q6P1Y1 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Rtl3Q6P1Y1 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.69■■□□□ 1.06
Rtl3Q6P1Y1 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
Rtl3Q6P1Y1 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Rtl3Q6P1Y1 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Rtl3Q6P1Y1 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 AC116713.1-201ENSMUST00000215074 430 ntBASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Rtl3Q6P1Y1 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
Rtl3Q6P1Y1 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Rtl3Q6P1Y1 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rtl3Q6P1Y1 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Rtl3Q6P1Y1 Gm10399-202ENSMUST00000202768 748 ntBASIC21.65■■□□□ 1.06
Rtl3Q6P1Y1 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rtl3Q6P1Y1 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.64■■□□□ 1.05
Rtl3Q6P1Y1 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.64■■□□□ 1.05
Rtl3Q6P1Y1 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.64■■□□□ 1.05
Rtl3Q6P1Y1 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.05
Rtl3Q6P1Y1 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Rtl3Q6P1Y1 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Rtl3Q6P1Y1 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
Rtl3Q6P1Y1 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Rtl3Q6P1Y1 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Rtl3Q6P1Y1 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Rtl3Q6P1Y1 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Rtl3Q6P1Y1 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Gm40881-201ENSMUST00000223397 166 ntBASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Rtl3Q6P1Y1 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Rtl3Q6P1Y1 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 72.6 ms