Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Col12a1Q60847 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Col12a1Q60847 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.41■■□□□ 1.02
Col12a1Q60847 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col12a1Q60847 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Col12a1Q60847 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Col12a1Q60847 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col12a1Q60847 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col12a1Q60847 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col12a1Q60847 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col12a1Q60847 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Col12a1Q60847 Gm42642-201ENSMUST00000200683 355 ntBASIC21.4■■□□□ 1.02
Col12a1Q60847 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col12a1Q60847 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col12a1Q60847 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Col12a1Q60847 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col12a1Q60847 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Col12a1Q60847 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.39■■□□□ 1.01
Col12a1Q60847 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col12a1Q60847 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col12a1Q60847 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
Col12a1Q60847 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col12a1Q60847 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col12a1Q60847 Gm12251-201ENSMUST00000117893 792 ntBASIC21.38■■□□□ 1.01
Col12a1Q60847 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.38■■□□□ 1.01
Col12a1Q60847 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Col12a1Q60847 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col12a1Q60847 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col12a1Q60847 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col12a1Q60847 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Col12a1Q60847 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col12a1Q60847 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col12a1Q60847 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.36■■□□□ 1.01
Col12a1Q60847 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col12a1Q60847 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Col12a1Q60847 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.35■■□□□ 1.01
Col12a1Q60847 AC099934.2-201ENSMUST00000196389 70 ntBASIC21.35■■□□□ 1.01
Col12a1Q60847 AC156953.1-201ENSMUST00000196953 70 ntBASIC21.35■■□□□ 1.01
Col12a1Q60847 AC157822.2-201ENSMUST00000200291 70 ntBASIC21.35■■□□□ 1.01
Col12a1Q60847 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
Col12a1Q60847 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Col12a1Q60847 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col12a1Q60847 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.34■■□□□ 1.01
Col12a1Q60847 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col12a1Q60847 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.34■■□□□ 1.01
Col12a1Q60847 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.33■■□□□ 1.01
Col12a1Q60847 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col12a1Q60847 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
Col12a1Q60847 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col12a1Q60847 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col12a1Q60847 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col12a1Q60847 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col12a1Q60847 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.33■■□□□ 1
Col12a1Q60847 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.33■■□□□ 1
Col12a1Q60847 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.33■■□□□ 1
Col12a1Q60847 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col12a1Q60847 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col12a1Q60847 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Col12a1Q60847 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col12a1Q60847 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Col12a1Q60847 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.32■■□□□ 1
Col12a1Q60847 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col12a1Q60847 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Col12a1Q60847 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Col12a1Q60847 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col12a1Q60847 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col12a1Q60847 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.3■■□□□ 1
Col12a1Q60847 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col12a1Q60847 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col12a1Q60847 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Col12a1Q60847 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col12a1Q60847 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.29■■□□□ 1
Col12a1Q60847 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC21.29■■□□□ 1
Col12a1Q60847 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col12a1Q60847 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col12a1Q60847 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col12a1Q60847 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col12a1Q60847 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Col12a1Q60847 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col12a1Q60847 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col12a1Q60847 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col12a1Q60847 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Col12a1Q60847 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col12a1Q60847 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col12a1Q60847 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Col12a1Q60847 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.27■■□□□ 1
Col12a1Q60847 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col12a1Q60847 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col12a1Q60847 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col12a1Q60847 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.27■□□□□ 0.99
Col12a1Q60847 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.27■□□□□ 0.99
Col12a1Q60847 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col12a1Q60847 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col12a1Q60847 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 20.3 ms