Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav6d-4Q5R1I0 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav6d-4Q5R1I0 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
Trav6d-4Q5R1I0 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC17.69■□□□□ 0.42
Trav6d-4Q5R1I0 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav6d-4Q5R1I0 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 AC153962.1-201ENSMUST00000218530 1948 ntBASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trav6d-4Q5R1I0 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC17.66■□□□□ 0.42
Trav6d-4Q5R1I0 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav6d-4Q5R1I0 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Trav6d-4Q5R1I0 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Trav6d-4Q5R1I0 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav6d-4Q5R1I0 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6d-4Q5R1I0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6d-4Q5R1I0 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Trav6d-4Q5R1I0 Gm22238-201ENSMUST00000175222 88 ntBASIC17.64■□□□□ 0.41
Trav6d-4Q5R1I0 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Trav6d-4Q5R1I0 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Trav6d-4Q5R1I0 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav6d-4Q5R1I0 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav6d-4Q5R1I0 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 58.4 ms