Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gm12251-201ENSMUST00000117893 792 ntBASIC21.15■□□□□ 0.98
Col9a1Q05722 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC21.15■□□□□ 0.98
Col9a1Q05722 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC21.15■□□□□ 0.98
Col9a1Q05722 Gm8520-201ENSMUST00000186517 868 ntBASIC21.15■□□□□ 0.98
Col9a1Q05722 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Col9a1Q05722 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.15■□□□□ 0.98
Col9a1Q05722 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Col9a1Q05722 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col9a1Q05722 Gm12441-201ENSMUST00000121806 588 ntBASIC21.14■□□□□ 0.97
Col9a1Q05722 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col9a1Q05722 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
Col9a1Q05722 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.14■□□□□ 0.97
Col9a1Q05722 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col9a1Q05722 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col9a1Q05722 Gm5576-201ENSMUST00000075809 1236 ntBASIC21.14■□□□□ 0.97
Col9a1Q05722 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col9a1Q05722 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col9a1Q05722 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col9a1Q05722 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col9a1Q05722 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Col9a1Q05722 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.12■□□□□ 0.97
Col9a1Q05722 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
Col9a1Q05722 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col9a1Q05722 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col9a1Q05722 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Col9a1Q05722 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.12■□□□□ 0.97
Col9a1Q05722 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col9a1Q05722 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Col9a1Q05722 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Col9a1Q05722 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC21.11■□□□□ 0.97
Col9a1Q05722 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC21.11■□□□□ 0.97
Col9a1Q05722 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Col9a1Q05722 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Col9a1Q05722 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.1■□□□□ 0.97
Col9a1Q05722 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.1■□□□□ 0.97
Col9a1Q05722 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col9a1Q05722 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col9a1Q05722 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Col9a1Q05722 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col9a1Q05722 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Col9a1Q05722 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC21.09■□□□□ 0.97
Col9a1Q05722 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Col9a1Q05722 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC21.09■□□□□ 0.97
Col9a1Q05722 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.09■□□□□ 0.97
Col9a1Q05722 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col9a1Q05722 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.09■□□□□ 0.97
Col9a1Q05722 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Col9a1Q05722 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
Col9a1Q05722 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col9a1Q05722 AC164433.2-201ENSMUST00000226346 1701 ntBASIC21.07■□□□□ 0.96
Col9a1Q05722 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
Col9a1Q05722 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col9a1Q05722 Gm8093-201ENSMUST00000128935 1892 ntBASIC21.07■□□□□ 0.96
Col9a1Q05722 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col9a1Q05722 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col9a1Q05722 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col9a1Q05722 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col9a1Q05722 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
Col9a1Q05722 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col9a1Q05722 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col9a1Q05722 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col9a1Q05722 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.05■□□□□ 0.96
Col9a1Q05722 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col9a1Q05722 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Col9a1Q05722 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Col9a1Q05722 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col9a1Q05722 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.04■□□□□ 0.96
Col9a1Q05722 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col9a1Q05722 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col9a1Q05722 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col9a1Q05722 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC21.04■□□□□ 0.96
Col9a1Q05722 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col9a1Q05722 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
Col9a1Q05722 Gm7199-201ENSMUST00000118327 1485 ntBASIC21.03■□□□□ 0.96
Col9a1Q05722 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col9a1Q05722 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC21.03■□□□□ 0.96
Col9a1Q05722 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.03■□□□□ 0.96
Col9a1Q05722 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col9a1Q05722 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col9a1Q05722 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col9a1Q05722 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Col9a1Q05722 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col9a1Q05722 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.02■□□□□ 0.96
Col9a1Q05722 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.02■□□□□ 0.96
Col9a1Q05722 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col9a1Q05722 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col9a1Q05722 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Col9a1Q05722 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.01■□□□□ 0.95
Col9a1Q05722 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col9a1Q05722 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.01■□□□□ 0.95
Col9a1Q05722 Gm42778-201ENSMUST00000199644 553 ntBASIC21.01■□□□□ 0.95
Col9a1Q05722 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Col9a1Q05722 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC21■□□□□ 0.95
Col9a1Q05722 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col9a1Q05722 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms