Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shox2P70390 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Shox2P70390 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Shox2P70390 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 AC122317.2-201ENSMUST00000218708 1248 ntBASIC20.9■□□□□ 0.94
Shox2P70390 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Shox2P70390 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Shox2P70390 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Shox2P70390 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.94
Shox2P70390 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Shox2P70390 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.89■□□□□ 0.93
Shox2P70390 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Shox2P70390 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Shox2P70390 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.89■□□□□ 0.93
Shox2P70390 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Shox2P70390 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Shox2P70390 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Shox2P70390 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Shox2P70390 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shox2P70390 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shox2P70390 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Shox2P70390 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shox2P70390 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Shox2P70390 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.88■□□□□ 0.93
Shox2P70390 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shox2P70390 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shox2P70390 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Shox2P70390 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shox2P70390 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shox2P70390 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
Shox2P70390 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.86■□□□□ 0.93
Shox2P70390 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Shox2P70390 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC20.86■□□□□ 0.93
Shox2P70390 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Shox2P70390 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Shox2P70390 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shox2P70390 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Shox2P70390 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Shox2P70390 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shox2P70390 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.85■□□□□ 0.93
Shox2P70390 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shox2P70390 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Shox2P70390 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.84■□□□□ 0.93
Shox2P70390 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Shox2P70390 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Shox2P70390 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Shox2P70390 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC20.84■□□□□ 0.93
Shox2P70390 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC20.84■□□□□ 0.93
Shox2P70390 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.84■□□□□ 0.93
Shox2P70390 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.84■□□□□ 0.93
Shox2P70390 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Shox2P70390 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.83■□□□□ 0.93
Shox2P70390 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shox2P70390 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.83■□□□□ 0.93
Shox2P70390 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shox2P70390 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Shox2P70390 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Shox2P70390 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC20.83■□□□□ 0.93
Shox2P70390 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Shox2P70390 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC20.83■□□□□ 0.92
Shox2P70390 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
Shox2P70390 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Shox2P70390 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Shox2P70390 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.82■□□□□ 0.92
Shox2P70390 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shox2P70390 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC20.82■□□□□ 0.92
Shox2P70390 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Shox2P70390 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Shox2P70390 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
Shox2P70390 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Shox2P70390 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Shox2P70390 Terc-201ENSMUST00000082862 423 ntBASIC20.81■□□□□ 0.92
Shox2P70390 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Shox2P70390 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC20.81■□□□□ 0.92
Shox2P70390 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Shox2P70390 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Shox2P70390 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Gm5987-201ENSMUST00000196433 1151 ntBASIC20.8■□□□□ 0.92
Shox2P70390 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Shox2P70390 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms