Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Sox3P53784 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC20.01■□□□□ 0.79
Sox3P53784 Gm45417-201ENSMUST00000209533 758 ntBASIC20.01■□□□□ 0.79
Sox3P53784 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox3P53784 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC20.01■□□□□ 0.79
Sox3P53784 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Sox3P53784 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sox3P53784 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sox3P53784 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC20■□□□□ 0.79
Sox3P53784 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20■□□□□ 0.79
Sox3P53784 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Sox3P53784 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
Sox3P53784 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Sox3P53784 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox3P53784 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
Sox3P53784 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Sox3P53784 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Sox3P53784 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sox3P53784 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
Sox3P53784 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Sox3P53784 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sox3P53784 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Sox3P53784 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Sox3P53784 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Sox3P53784 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Sox3P53784 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC19.97■□□□□ 0.79
Sox3P53784 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Sox3P53784 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Sox3P53784 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC19.97■□□□□ 0.79
Sox3P53784 Gm40881-201ENSMUST00000223397 166 ntBASIC19.97■□□□□ 0.79
Sox3P53784 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sox3P53784 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sox3P53784 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
Sox3P53784 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.96■□□□□ 0.79
Sox3P53784 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sox3P53784 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Sox3P53784 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sox3P53784 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Sox3P53784 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Sox3P53784 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.95■□□□□ 0.78
Sox3P53784 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Sox3P53784 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Sox3P53784 Gm18284-201ENSMUST00000172604 624 ntBASIC19.95■□□□□ 0.78
Sox3P53784 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC19.94■□□□□ 0.78
Sox3P53784 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC19.94■□□□□ 0.78
Sox3P53784 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sox3P53784 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sox3P53784 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Sox3P53784 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Sox3P53784 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
Sox3P53784 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.93■□□□□ 0.78
Sox3P53784 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Sox3P53784 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC19.93■□□□□ 0.78
Sox3P53784 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Sox3P53784 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC19.92■□□□□ 0.78
Sox3P53784 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Gm32051-202ENSMUST00000197905 2385 ntBASIC19.92■□□□□ 0.78
Sox3P53784 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.92■□□□□ 0.78
Sox3P53784 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Sox3P53784 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Sox3P53784 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Sox3P53784 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sox3P53784 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Sox3P53784 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Sox3P53784 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sox3P53784 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Sox3P53784 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Sox3P53784 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Sox3P53784 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sox3P53784 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sox3P53784 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC19.9■□□□□ 0.78
Sox3P53784 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Sox3P53784 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Sox3P53784 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Sox3P53784 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC19.89■□□□□ 0.77
Sox3P53784 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC19.89■□□□□ 0.77
Sox3P53784 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sox3P53784 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC19.89■□□□□ 0.77
Sox3P53784 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Sox3P53784 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sox3P53784 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Sox3P53784 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Sox3P53784 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Sox3P53784 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sox3P53784 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sox3P53784 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sox3P53784 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Sox3P53784 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Sox3P53784 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 13.8 ms