Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
Col5a1O88207 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col5a1O88207 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col5a1O88207 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col5a1O88207 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC19.39■□□□□ 0.69
Col5a1O88207 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col5a1O88207 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col5a1O88207 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col5a1O88207 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col5a1O88207 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Col5a1O88207 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col5a1O88207 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.37■□□□□ 0.69
Col5a1O88207 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Col5a1O88207 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Col5a1O88207 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Col5a1O88207 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col5a1O88207 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col5a1O88207 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Col5a1O88207 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC19.36■□□□□ 0.69
Col5a1O88207 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Col5a1O88207 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC19.35■□□□□ 0.69
Col5a1O88207 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC19.35■□□□□ 0.69
Col5a1O88207 Gm43017-201ENSMUST00000198296 752 ntBASIC19.35■□□□□ 0.69
Col5a1O88207 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col5a1O88207 Gm6139-201ENSMUST00000079261 882 ntBASIC19.35■□□□□ 0.69
Col5a1O88207 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Col5a1O88207 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Col5a1O88207 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.35■□□□□ 0.69
Col5a1O88207 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col5a1O88207 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Col5a1O88207 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.35■□□□□ 0.69
Col5a1O88207 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col5a1O88207 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC19.35■□□□□ 0.69
Col5a1O88207 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Col5a1O88207 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col5a1O88207 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.34■□□□□ 0.69
Col5a1O88207 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col5a1O88207 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col5a1O88207 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.34■□□□□ 0.69
Col5a1O88207 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC19.34■□□□□ 0.69
Col5a1O88207 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
Col5a1O88207 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
Col5a1O88207 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.34■□□□□ 0.69
Col5a1O88207 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Col5a1O88207 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col5a1O88207 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Col5a1O88207 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Col5a1O88207 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC19.33■□□□□ 0.69
Col5a1O88207 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC19.33■□□□□ 0.69
Col5a1O88207 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Col5a1O88207 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Col5a1O88207 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Col5a1O88207 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.32■□□□□ 0.68
Col5a1O88207 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col5a1O88207 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Col5a1O88207 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Col5a1O88207 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Col5a1O88207 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Col5a1O88207 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Col5a1O88207 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Col5a1O88207 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Col5a1O88207 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col5a1O88207 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col5a1O88207 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col5a1O88207 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.3■□□□□ 0.68
Col5a1O88207 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Col5a1O88207 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col5a1O88207 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Col5a1O88207 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC19.3■□□□□ 0.68
Col5a1O88207 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Col5a1O88207 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Col5a1O88207 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Col5a1O88207 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Col5a1O88207 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col5a1O88207 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col5a1O88207 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Col5a1O88207 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Col5a1O88207 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms