Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC21.71■■□□□ 1.07
Sdc4O35988 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Sdc4O35988 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Sdc4O35988 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Sdc4O35988 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Sdc4O35988 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.7■■□□□ 1.06
Sdc4O35988 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Sdc4O35988 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Sdc4O35988 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.69■■□□□ 1.06
Sdc4O35988 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Sdc4O35988 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.68■■□□□ 1.06
Sdc4O35988 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC21.68■■□□□ 1.06
Sdc4O35988 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Sdc4O35988 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Sdc4O35988 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Sdc4O35988 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Sdc4O35988 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Sdc4O35988 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Sdc4O35988 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Sdc4O35988 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Sdc4O35988 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Sdc4O35988 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Sdc4O35988 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Sdc4O35988 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Sdc4O35988 Gm9847-201ENSMUST00000052528 599 ntBASIC21.66■■□□□ 1.06
Sdc4O35988 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Sdc4O35988 Gm13241-201ENSMUST00000094493 780 ntBASIC21.66■■□□□ 1.06
Sdc4O35988 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Sdc4O35988 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Sdc4O35988 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.66■■□□□ 1.06
Sdc4O35988 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.65■■□□□ 1.06
Sdc4O35988 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.65■■□□□ 1.06
Sdc4O35988 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.65■■□□□ 1.06
Sdc4O35988 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Sdc4O35988 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Sdc4O35988 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Sdc4O35988 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Sdc4O35988 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.64■■□□□ 1.05
Sdc4O35988 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Sdc4O35988 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.63■■□□□ 1.05
Sdc4O35988 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.63■■□□□ 1.05
Sdc4O35988 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
Sdc4O35988 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Sdc4O35988 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Sdc4O35988 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Sdc4O35988 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Sdc4O35988 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.62■■□□□ 1.05
Sdc4O35988 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Sdc4O35988 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Sdc4O35988 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Sdc4O35988 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Sdc4O35988 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Sdc4O35988 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Sdc4O35988 Gm15039-201ENSMUST00000118914 875 ntBASIC21.61■■□□□ 1.05
Sdc4O35988 Gm12922-201ENSMUST00000120626 809 ntBASIC21.61■■□□□ 1.05
Sdc4O35988 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Sdc4O35988 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
Sdc4O35988 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Sdc4O35988 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
Sdc4O35988 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC21.6■■□□□ 1.05
Sdc4O35988 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Sdc4O35988 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
Sdc4O35988 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Sdc4O35988 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sdc4O35988 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sdc4O35988 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sdc4O35988 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sdc4O35988 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.59■■□□□ 1.05
Sdc4O35988 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Sdc4O35988 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
Sdc4O35988 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Sdc4O35988 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Sdc4O35988 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.58■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms