Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Pcdh1F7BJK1 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Pcdh1F7BJK1 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Pcdh1F7BJK1 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Pcdh1F7BJK1 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Pcdh1F7BJK1 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 AC151971.4-201ENSMUST00000214717 704 ntBASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Pcdh1F7BJK1 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.62
Pcdh1F7BJK1 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Pcdh1F7BJK1 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC18.88■□□□□ 0.61
Pcdh1F7BJK1 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdh1F7BJK1 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.88■□□□□ 0.61
Pcdh1F7BJK1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdh1F7BJK1 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Pcdh1F7BJK1 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Pcdh1F7BJK1 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Pcdh1F7BJK1 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdh1F7BJK1 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdh1F7BJK1 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdh1F7BJK1 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.86■□□□□ 0.61
Pcdh1F7BJK1 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Pcdh1F7BJK1 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC18.85■□□□□ 0.61
Pcdh1F7BJK1 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdh1F7BJK1 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdh1F7BJK1 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdh1F7BJK1 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdh1F7BJK1 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Pcdh1F7BJK1 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Scarna2-201ENSMUST00000157560 414 ntBASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Gm9806-201ENSMUST00000051080 552 ntBASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Pcdh1F7BJK1 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Pcdh1F7BJK1 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.83■□□□□ 0.61
Pcdh1F7BJK1 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Pcdh1F7BJK1 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC18.83■□□□□ 0.61
Pcdh1F7BJK1 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Pcdh1F7BJK1 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Pcdh1F7BJK1 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
Pcdh1F7BJK1 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdh1F7BJK1 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdh1F7BJK1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC18.82■□□□□ 0.6
Pcdh1F7BJK1 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Pcdh1F7BJK1 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Pcdh1F7BJK1 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Gm11687-201ENSMUST00000118911 886 ntBASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.81■□□□□ 0.6
Pcdh1F7BJK1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdh1F7BJK1 Gm16437-201ENSMUST00000025669 507 ntBASIC18.8■□□□□ 0.6
Pcdh1F7BJK1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdh1F7BJK1 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdh1F7BJK1 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Pcdh1F7BJK1 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Pcdh1F7BJK1 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms