Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Chd3B1AR17 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Chd3B1AR17 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.8■□□□□ 0.92
Chd3B1AR17 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Chd3B1AR17 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Chd3B1AR17 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Chd3B1AR17 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Chd3B1AR17 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
Chd3B1AR17 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC20.79■□□□□ 0.92
Chd3B1AR17 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chd3B1AR17 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chd3B1AR17 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chd3B1AR17 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Chd3B1AR17 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC20.79■□□□□ 0.92
Chd3B1AR17 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.79■□□□□ 0.92
Chd3B1AR17 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Chd3B1AR17 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chd3B1AR17 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Chd3B1AR17 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chd3B1AR17 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Chd3B1AR17 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Chd3B1AR17 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Chd3B1AR17 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Chd3B1AR17 Gm9847-201ENSMUST00000052528 599 ntBASIC20.77■□□□□ 0.92
Chd3B1AR17 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC20.77■□□□□ 0.91
Chd3B1AR17 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chd3B1AR17 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Chd3B1AR17 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chd3B1AR17 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chd3B1AR17 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Chd3B1AR17 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Chd3B1AR17 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.76■□□□□ 0.91
Chd3B1AR17 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Chd3B1AR17 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Chd3B1AR17 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Chd3B1AR17 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Chd3B1AR17 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Chd3B1AR17 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chd3B1AR17 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chd3B1AR17 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chd3B1AR17 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
Chd3B1AR17 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chd3B1AR17 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Chd3B1AR17 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Chd3B1AR17 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.73■□□□□ 0.91
Chd3B1AR17 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Chd3B1AR17 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Chd3B1AR17 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Chd3B1AR17 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.72■□□□□ 0.91
Chd3B1AR17 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Chd3B1AR17 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.71■□□□□ 0.91
Chd3B1AR17 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.71■□□□□ 0.91
Chd3B1AR17 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Chd3B1AR17 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 AC116713.1-201ENSMUST00000215074 430 ntBASIC20.71■□□□□ 0.91
Chd3B1AR17 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Chd3B1AR17 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Chd3B1AR17 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chd3B1AR17 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Chd3B1AR17 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chd3B1AR17 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chd3B1AR17 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Chd3B1AR17 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Chd3B1AR17 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Chd3B1AR17 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd3B1AR17 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Chd3B1AR17 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd3B1AR17 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Chd3B1AR17 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
Chd3B1AR17 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd3B1AR17 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Chd3B1AR17 Gm13241-201ENSMUST00000094493 780 ntBASIC20.68■□□□□ 0.9
Chd3B1AR17 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Chd3B1AR17 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms