Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.2□□□□□ -0.46
Sox3P53784 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.2□□□□□ -0.46
Sox3P53784 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.2□□□□□ -0.46
Sox3P53784 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.2□□□□□ -0.46
Sox3P53784 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC12.2□□□□□ -0.46
Sox3P53784 AC154680.1-201ENSMUST00000224376 859 ntBASIC12.2□□□□□ -0.46
Sox3P53784 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.2□□□□□ -0.46
Sox3P53784 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.2□□□□□ -0.46
Sox3P53784 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Sox3P53784 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC12.19□□□□□ -0.46
Sox3P53784 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Sox3P53784 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.19□□□□□ -0.46
Sox3P53784 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Gm11618-201ENSMUST00000117946 267 ntBASIC12.19□□□□□ -0.46
Sox3P53784 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC12.19□□□□□ -0.46
Sox3P53784 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC12.19□□□□□ -0.46
Sox3P53784 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC12.19□□□□□ -0.46
Sox3P53784 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC12.19□□□□□ -0.46
Sox3P53784 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Sox3P53784 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.19□□□□□ -0.46
Sox3P53784 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.19□□□□□ -0.46
Sox3P53784 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Sox3P53784 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Rbm39-203ENSMUST00000109587 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC12.18□□□□□ -0.46
Sox3P53784 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
Sox3P53784 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Sox3P53784 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC12.18□□□□□ -0.46
Sox3P53784 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Gm7809-201ENSMUST00000153199 742 ntBASIC12.18□□□□□ -0.46
Sox3P53784 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC12.18□□□□□ -0.46
Sox3P53784 Timm10-201ENSMUST00000028470 690 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC12.18□□□□□ -0.46
Sox3P53784 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Sox3P53784 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms